ENGELEN, KRISTOF ARTHUR J.
ENGELEN, KRISTOF ARTHUR J.
CRI [2016-02 - 2021-12]: UNIT OF COMPUTATIONAL BIOLOGY
A COMPASS for VESPUCCI: a FAIR way to explore the grapevine transcriptomic landscape
2022-01-01 Moretto, M.; Sonego, P.; Pilati, S.; Matus, J.T.; Costantini, L.; Malacarne, G.; Engelen, K.
Ethylene-auxin crosstalk regulates postharvest fruit ripening process in apple
2021-01-01 Busatto, N.; Tadiello, A.; Moretto, M.; Farneti, B.; Populin, F.; Vrhovsek, U.; Commisso, M.; Sartori, E.; Sonego, P.; Biasioli, F.; Costa, G.; Guzzo, F.; Fontana, P.; Engelen, K.; Costa, F.
PulmonDB: a curated lung disease gene expression database
2020-01-01 Villaseñor-Altamirano, A.B.; Moretto, M.; Maldonado, M.; Zayas-Del Moral, A.; Munguía-Reyes, A.; Romero, Y.; García-Sotelo, J.S.; Aguilar, L.A.; Aldana-Assad, O.; Engelen, K.; Selman, M.; Collado-Vides, J.; Balderas-Martínez, Y.I.; Medina-Rivera, A.
The molecular dialogue between grapevine inflorescence/berry and Botrytis cinerea during initial, quiescent and egression infection stages
2019-01-01 Mehari, Z.; Malacarne, G.; Pilati, S.; Sonego, P.; Engelen, K.; Lionetti, V.; Bellincampi, D.; Vrhovsek, U.; Zottini, M.; Baraldi, E.; Moser, C.
First step toward gene expression data integration: transcriptomic data acquisition with COMMAND>_
2019-01-01 Moretto, M.; Sonego, P.; Villaseñor-Altamirano, A.B.; Engelen, K.
Designing a dual RNA-Seq approach to dissect the mode of action of biocontrol bacteria against phytopathogenic eukaryotes
2018-01-01 Puopolo, G.; Tomada, S.; Sonego, P.; Moretto, M.; Engelen, K.; Pertot, I.; Perazzolli, M.
NES2RA: network expansion by stratified variable subsetting and ranking aggregation
2018-01-01 Asnicar, F.; Masera, L.; Coller, E.; Gallo, C.; Sella, N.; Tolio, T.; Morettin, P.; Erculiani, L.; Galante, F.; Semeniuta, S.; Malacarne, G.; Engelen, K.A.; Argentini, A.; Cavecchia, V.; Moser, C.; Blanzieri, E.
The genome sequence and transcriptome of Potentilla micrantha and their comparison to Fragaria vesca (the woodland strawberry)
2018-01-01 Buti, M.; Moretto, M.; Barghini, E.; Mascagni, F.; Natali, L.; Brilli, M.; Lomsadze, A.; Sonego, P.; Giongo, L.; Alonge, M.; Velasco, R.; Varotto, C.; Šurbanovski, N.; Borodovsky, M.; Ward, J.A.; Engelen, K.; Cavallini, A.; Cestaro, A.; Sargent, D.J.
Molecular analysis of the early interaction between the grapevine flower and Botrytis cinerea reveals that prompt activation of specific host pathways leads to fungus quiescence
2017-01-01 Haile, Z.M.; Pilati, S.; Sonego, P.; Malacarne, G.; Vrhovsek, U.; Engelen, K.; Tudzinsky, P.; Zottini, M.; Baraldi, E.; Moser, C.
Abscisic acid Is a major regulator of grape berry ripening onset: new insights into ABA signaling network
2017-01-01 Pilati, S.; Bagagli, G.; Sonego, P.; Moretto, M.; Brazzale, D.; Castorina, G.; Simoni, L.; Tonelli, C.; Guella, G.; Engelen, K.A.; Galbiati, M.; Moser, C.
Dual RNA-Seq of Lysobacter capsici AZ78 – Phytophthora infestans interaction shows the implementation of attack strategies by the bacterium and unsuccessful oomycete defense responses
2017-01-01 Tomada, S.; Sonego, P.; Moretto, M.; Engelen, K.; Pertot, I.; Perazzolli, M.; Puopolo, G.
The grapevine VvibZIPC22 transcription factor is involved in the regulation of flavonoid biosynthesis
2016-01-01 Malacarne, G.; Coller, E.; Czemmel, S.; Vrhovsek, U.; Engelen, K.A.; Goremykin, V.; Bogs, J.; Moser, C.
Practical approaches for mining frequent patterns in molecular datasets
2016-01-01 Naulaerts, S.; Moens, S.; Meysman, P.; Engelen, K.A.; Vanden Berghe, W.; Goethals, B.; Laukens, K.; Meysman, P.
Characterizing the interaction between Botrytis cinerea and grapevine inflorescences
2016-01-01 Haile, Z.M.; Sonego, P.; Engelen, K.A.; Vrhovsek, U.; Tudzynski, P.; Baraldi, E.; Moser, C.
VESPUCCI: exploring patterns of gene expression in grapevine
2016-01-01 Moretto, M.; Sonego, P.; Pilati, S.; Malacarne, G.; Costantini, L.; Grzeskowiak, L.S.; Bagagli, G.; Grando, M.S.; Moser, C.; Engelen, K.A.
Complete genome sequence of Bacillus amyloliquefaciens subsp. plantarum S499, a rhizobacterium that triggers plant defences and inhibits fungal phytopathogens
2016-01-01 Molinatto, G.; Puopolo, G.; Sonego, P.; Moretto, M.; Engelen, K.A.; Ongena, M.; Pertot, I.
Insights into the role of the berry-specific ethylene responsive factor VviERF045
2016-01-01 Leida, C.A.; Dal Ri, A.; Dalla Costa, L.; Gómez, M.D.; Pompili, V.; Sonego, P.; Engelen, K.A.; Masuero, D.; Ríos, G.; Moser, C.
The Lysobacter capsici AZ78 genome has a gene pool enabling it to interact successfully with phytopathogenic microorganisms and environmental factors
2016-01-01 Puopolo, G.; Tomada, S.; Sonego, P.; Moretto, M.; Engelen, K.A.; Perazzolli, M.; Pertot, I.
Whole-genome comparative analysis of virulence genes unveils similarities and differences between endophytes and other symbiotic bacteria
2015-01-01 Lopez Fernandez, J.S.; Sonego, P.; Moretto, M.; Pancher, M.; Engelen, K.A.; Pertot, I.; Campisano, A.
Evolution of intra-specific regulatory networks in a multipartite bacterial genome
2015-01-01 Galardini, M.; Brilli, M.; Spini, G.; Rossi, M.; Roncaglia, B.; Bani, A.; Chiancianesi, M.; Moretto, M.; Engelen, K.A.; Bacci, G.; Pini, F.; Biondi, E.G.; Bazzicalupo, M.; Mengoni, A.
| Data di pubblicazione | Titolo | Autore(i) | Tipo | File |
|---|---|---|---|---|
| 1-gen-2022 | A COMPASS for VESPUCCI: a FAIR way to explore the grapevine transcriptomic landscape | Moretto, M.; Sonego, P.; Pilati, S.; Matus, J.T.; Costantini, L.; Malacarne, G.; Engelen, K. | Articolo in rivista | |
| 1-gen-2021 | Ethylene-auxin crosstalk regulates postharvest fruit ripening process in apple | Busatto, N.; Tadiello, A.; Moretto, M.; Farneti, B.; Populin, F.; Vrhovsek, U.; Commisso, M.; Sartori, E.; Sonego, P.; Biasioli, F.; Costa, G.; Guzzo, F.; Fontana, P.; Engelen, K.; Costa, F. | Articolo in rivista | |
| 1-gen-2020 | PulmonDB: a curated lung disease gene expression database | Villaseñor-Altamirano, A.B.; Moretto, M.; Maldonado, M.; Zayas-Del Moral, A.; Munguía-Reyes, A.; Romero, Y.; García-Sotelo, J.S.; Aguilar, L.A.; Aldana-Assad, O.; Engelen, K.; Selman, M.; Collado-Vides, J.; Balderas-Martínez, Y.I.; Medina-Rivera, A. | Articolo in rivista | |
| 1-gen-2019 | The molecular dialogue between grapevine inflorescence/berry and Botrytis cinerea during initial, quiescent and egression infection stages | Mehari, Z.; Malacarne, G.; Pilati, S.; Sonego, P.; Engelen, K.; Lionetti, V.; Bellincampi, D.; Vrhovsek, U.; Zottini, M.; Baraldi, E.; Moser, C. | - | |
| 1-gen-2019 | First step toward gene expression data integration: transcriptomic data acquisition with COMMAND>_ | Moretto, M.; Sonego, P.; Villaseñor-Altamirano, A.B.; Engelen, K. | Articolo in rivista | |
| 1-gen-2018 | Designing a dual RNA-Seq approach to dissect the mode of action of biocontrol bacteria against phytopathogenic eukaryotes | Puopolo, G.; Tomada, S.; Sonego, P.; Moretto, M.; Engelen, K.; Pertot, I.; Perazzolli, M. | Articolo in rivista | |
| 1-gen-2018 | NES2RA: network expansion by stratified variable subsetting and ranking aggregation | Asnicar, F.; Masera, L.; Coller, E.; Gallo, C.; Sella, N.; Tolio, T.; Morettin, P.; Erculiani, L.; Galante, F.; Semeniuta, S.; Malacarne, G.; Engelen, K.A.; Argentini, A.; Cavecchia, V.; Moser, C.; Blanzieri, E. | Articolo in rivista | |
| 1-gen-2018 | The genome sequence and transcriptome of Potentilla micrantha and their comparison to Fragaria vesca (the woodland strawberry) | Buti, M.; Moretto, M.; Barghini, E.; Mascagni, F.; Natali, L.; Brilli, M.; Lomsadze, A.; Sonego, P.; Giongo, L.; Alonge, M.; Velasco, R.; Varotto, C.; Šurbanovski, N.; Borodovsky, M.; Ward, J.A.; Engelen, K.; Cavallini, A.; Cestaro, A.; Sargent, D.J. | Articolo in rivista | |
| 1-gen-2017 | Molecular analysis of the early interaction between the grapevine flower and Botrytis cinerea reveals that prompt activation of specific host pathways leads to fungus quiescence | Haile, Z.M.; Pilati, S.; Sonego, P.; Malacarne, G.; Vrhovsek, U.; Engelen, K.; Tudzinsky, P.; Zottini, M.; Baraldi, E.; Moser, C. | Articolo in rivista | |
| 1-gen-2017 | Abscisic acid Is a major regulator of grape berry ripening onset: new insights into ABA signaling network | Pilati, S.; Bagagli, G.; Sonego, P.; Moretto, M.; Brazzale, D.; Castorina, G.; Simoni, L.; Tonelli, C.; Guella, G.; Engelen, K.A.; Galbiati, M.; Moser, C. | Articolo in rivista | |
| 1-gen-2017 | Dual RNA-Seq of Lysobacter capsici AZ78 – Phytophthora infestans interaction shows the implementation of attack strategies by the bacterium and unsuccessful oomycete defense responses | Tomada, S.; Sonego, P.; Moretto, M.; Engelen, K.; Pertot, I.; Perazzolli, M.; Puopolo, G. | Articolo in rivista | |
| 1-gen-2016 | The grapevine VvibZIPC22 transcription factor is involved in the regulation of flavonoid biosynthesis | Malacarne, G.; Coller, E.; Czemmel, S.; Vrhovsek, U.; Engelen, K.A.; Goremykin, V.; Bogs, J.; Moser, C. | Articolo in rivista | |
| 1-gen-2016 | Practical approaches for mining frequent patterns in molecular datasets | Naulaerts, S.; Moens, S.; Meysman, P.; Engelen, K.A.; Vanden Berghe, W.; Goethals, B.; Laukens, K.; Meysman, P. | Articolo in rivista | |
| 1-gen-2016 | Characterizing the interaction between Botrytis cinerea and grapevine inflorescences | Haile, Z.M.; Sonego, P.; Engelen, K.A.; Vrhovsek, U.; Tudzynski, P.; Baraldi, E.; Moser, C. | Articolo in rivista | |
| 1-gen-2016 | VESPUCCI: exploring patterns of gene expression in grapevine | Moretto, M.; Sonego, P.; Pilati, S.; Malacarne, G.; Costantini, L.; Grzeskowiak, L.S.; Bagagli, G.; Grando, M.S.; Moser, C.; Engelen, K.A. | Articolo in rivista | |
| 1-gen-2016 | Complete genome sequence of Bacillus amyloliquefaciens subsp. plantarum S499, a rhizobacterium that triggers plant defences and inhibits fungal phytopathogens | Molinatto, G.; Puopolo, G.; Sonego, P.; Moretto, M.; Engelen, K.A.; Ongena, M.; Pertot, I. | Articolo in rivista | |
| 1-gen-2016 | Insights into the role of the berry-specific ethylene responsive factor VviERF045 | Leida, C.A.; Dal Ri, A.; Dalla Costa, L.; Gómez, M.D.; Pompili, V.; Sonego, P.; Engelen, K.A.; Masuero, D.; Ríos, G.; Moser, C. | Articolo in rivista | |
| 1-gen-2016 | The Lysobacter capsici AZ78 genome has a gene pool enabling it to interact successfully with phytopathogenic microorganisms and environmental factors | Puopolo, G.; Tomada, S.; Sonego, P.; Moretto, M.; Engelen, K.A.; Perazzolli, M.; Pertot, I. | Articolo in rivista | |
| 1-gen-2015 | Whole-genome comparative analysis of virulence genes unveils similarities and differences between endophytes and other symbiotic bacteria | Lopez Fernandez, J.S.; Sonego, P.; Moretto, M.; Pancher, M.; Engelen, K.A.; Pertot, I.; Campisano, A. | Articolo in rivista | |
| 1-gen-2015 | Evolution of intra-specific regulatory networks in a multipartite bacterial genome | Galardini, M.; Brilli, M.; Spini, G.; Rossi, M.; Roncaglia, B.; Bani, A.; Chiancianesi, M.; Moretto, M.; Engelen, K.A.; Bacci, G.; Pini, F.; Biondi, E.G.; Bazzicalupo, M.; Mengoni, A. | Articolo in rivista |