Sfoglia per Autore
Deconstruction of the (paleo)polyploid grapevine genome based on the analysis of transposition events involving NBS resistance genes
2012-01-01 Malacarne, G.; Perazzolli, M.; Cestaro, A.; Sterck, L.; Fontana, P.; Van de Peer, Y.; Viola, R.; Velasco, R.; Salamini, F.
Downy mildew resistance induced by Trichoderma harzianum T39 in susceptible grapevines partially mimics transcriptional changes of resistant genotypes
2012-01-01 Perazzolli, M.; Moretto, M.; Fontana, P.; Ferrarini, A.; Velasco, R.; Moser, C.; Delledonne, M.; Pertot, I.
Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data
2012-01-01 Finotello, F.; Lavezzo, E.; Fontana, P.; Peruzzo, D.; Albiero, A.; Barzon, L.; Falda, M.; Di Camillo, B.; Toppo, S.
Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms
2012-01-01 Falda, M.; Toppo, S.; Pescarolo, A.; Lavezzo, E.; Di Camillo, B.; Facchinetti, A.; Cilia, E.; Velasco, R.; Fontana, P.
Identification of specific grapevine biomarkers to select efficient resistance inducers
2013-01-01 Lenzi, L.; Palmieri, M.C.; Moretto, M.; Fontana, P.; Matafora, V.; Bachi, A.; Pertot, I.; Perazzolli, M.
Pathway-based analysis of microarray and RNAseq data using pathway processor 2.0
2013-01-01 Beltrame, L.; Bianco, L.; Fontana, P.; Cavalieri, D.
Linking genomics and ecology to investigate the complex evolution of an invasive Drosophila pest
2013-01-01 Ometto, L.; Cestaro, A.; Ramasamy, S.; Grassi, A.; Revadi, S.; Siozios, S.; Moretto, M.; Fontana, P.; Varotto, C.; Pisani, D.; Dekker, T.; Wrobel, N.; Viola, R.; Pertot, I.; Cavalieri, D.; Blaxter, M.; Anfora, G.; Rota Stabelli, O.
Pathway Processor 2.0: a web resource for pathway-based analysis of high-throughput data
2013-01-01 Beltrame, L.; Bianco, L.; Fontana, P.; Cavalieri, D.
Identification of Pyrus single nucleotide polymorphisms (SNPs) and evaluation for genetic mapping in European pear and interspecific Pyrus hybrids
2013-01-01 Montanari, S.; Saeed, M.; Knaebel, M.; Kim, Y.K.; Troggio, M.; Malnoy, M.A.; Velasco, R.; Fontana, P.; Won, K.H.; Durel, C.E.; Perchepied, L.; Schaffer, R.; Wiedow, C.; Bus, V.; Brewer, L.; Gardiner, S.E.; Crowhurst, R.N.; Chagné, D.
A large-scale evaluation of computational protein function prediction
2013-01-01 Radivojac, P.; Clark, W.T.; Oron, T.R.; Schnoes, A.M.; Wittkop, T.; Sokolov, A.; Graim, K.; Funk, C.; Verspoor, K.; Ben Hur, A.; Pandey, G.; Yunes, J.M.; Talwalkar, A.S.; Repo, S.; Souza, M.L.; Piovesan, D.; Casadio, R.; Wang, Z.; Cheng, J.L.; Fang, H.; Goughl, J.; Koskinen, P.; Toronen, P.; Nokso Koivisto, J.; Holm, L.; Cozzetto, D.; Buchan, D.W.A.; Bryson, K.; Jones, D.T.; Limaye, B.; Inamdar, H.; Datta, A.; Manjari, S.K.; Joshi, R.; Chitale, M.; Kihara, D.; Lisewski, A.M.; Erdin, S.; Venner, E.; Lichtarge, O.; Rentzsch, R.; Yang, H.X.; Romero, A.E.; Bhat, P.; Paccanaro, A.; Hamp, T.; Kassner, R.; Seemayer, S.; Vicedo, E.; Schaefer, C.; Achten, D.; Auer, F.; Boehm, A.; Braun, T.; Hecht, M.; Heron, M.; Honigschmid, P.; Hopf, T.A.; Kaufmann, S.; Kiening, M.; Krompass, D.; Landerer, C.; Mahlich, Y.; Roos, M.; Bjorne, J.; Salakoski, T.; Wong, A.; Shatkay, H.; Gatzmann, F.; Sommer, I.; Wass, M.N.; Sternberg, M.J.E.; Skunca, N.; Supek, F.; Bosnjak, M.; Panov, P.; Dzeroski, S.; Smuc, T.; Kourmpetis, Y.A.I.; van Dijk, A.D.J.; ter Braak, C.J.F.; Zhou, Y.P.; Gong, Q.T.; Dong, X.R.; Tian, W.D.; Falda, M.; Fontana, P.; Lavezzo, E.; Di Camillo, B.; Toppo, S.; Lan, L.; Djuric, N.; Guo, Y.H.; Vucetic, S.; Bairoch, A.; Linial, M.; Babbitt, P.C.; Brenner, S.E.; Orengo, C.; Rost, B.; Mooney, S.D.; Friedberg, I.
Characterization of Resistance Gene Analogues (RGAs) in apple (Malus x domestica Borkh.) and their evolutionary history of the Rosaceae family
2014-01-01 Perazzolli, M.; Malacarne, G.; Baldo, A.; Righetti, L.; Bailey, A.G.; Fontana, P.; Velasco, R.; Malnoy, M.A.
keeSeek: searching distant non-existing words in genomes for PCR-based applications
2014-01-01 Falda, M.; Fontana, P.; Barzon, L.; Toppo, S.; Lavezzo, E.
The draft genome sequence of European pear (Pyrus communis L. ‘Bartlett’)
2014-01-01 Chagné, D.; Crowhurs, R.N.; Pindo, M.; Thrimawithana, A.; Deng, C.; Ireland, H.; Fiers, M.; Dzierzon, H.; Cestaro, A.; Fontana, P.; Bianco, L.; Lu, A.; Storey, R.; Knäbel, M.; Saeed, M.; Montanari, S.; Kyeong Kim, Y.; Nicolini, D.; Larger, S.; Stefani, E.; Allan, A.C.; Bowen, J.; Harvey, I.; Johnston, J.; Malnoy, M.A.; Troggio, M.; Perchepied, L.; Sawyer, G.; Wiedow, C.; Won, K.; Viola, R.; Hellens, R.P.; Brewer, L.; Bus, V.G.M.; Schaffer, R.J.; Gardiner, S.E.; Velasco, R.
MICCA: a complete and accurate software for taxonomic profiling of metagenomic data
2015-01-01 Albanese, D.; Fontana, P.; De Filippo, C.; Cavalieri, D.; Donati, C.
Identification of low temperature stress regulated transcript sequences and gene families in Italian cypress
2015-01-01 La Porta, N.; Sablok, G.; Emiliani, G.; Hietala, A.M.; Giovannelli, A.; Fontana, P.; Potenza, E.; Baldi, P.
Enhancing protein function prediction with taxonomic constraints: the Argot2.5 web server
2016-01-01 Lavezzo, E.; Falda, M.; Fontana, P.; Bianco, L.; Toppo, S.
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
2016-01-01 Jiang, Y.; Oron, T.R.; Clark, W.T.; Bankapur, A.R.; D'Andrea, D.; Lepore, R.; Funk, C.S.; Kahanda, I.; Verspoor, K.M.; Ben Hur, A.; Koo, D.C.E.; Penfold Brown, D.; Shasha, D.; Youngs, N.; Bonneau, R.; Lin, A.; Sahraeian, S.M.E.; Martelli, P.L.; Profiti, G.; Casadio, R.; Cao, R.; Zhong, Z.; Cheng, J.; Altenhoff, A.; Skunca, N.; Dessimoz, C.; Dogan, T.; Hakala, K.; Kaewphan, S.; Mehryary, F.; Salakoski, T.; Ginter, F.; Fang, H.; Smithers, B.; Oates, M.; Gough, J.; Törönen, P.; Koskinen, P.; Holm, L.; Chen, C.; Hsu, W.; Bryson, K.; Cozzetto, D.; Minneci, F.; Jones, D.T.; Chapman, S.; Bkc, D.; Khan, I.K.; Kihara, D.; Ofer, D.; Rappoport, N.; Stern, A.; Cibrian Uhalte, E.; Denny, P.; Foulger, R.E.; Hieta, R.; Legge, D.; Lovering, R.C.; Magrane, M.; Melidoni, A.N.; Mutowo Meullenet, P.; Pichler, K.; Shypitsyna, A.; Li, B.; Zakeri, P.; Elshal, S.; Tranchevent, L.; Das, S.; Dawson, N.L.; Lee, D.; Lees, J.G.; Sillitoe, I.; Bhat, P.; Nepusz, T.; Romero, A.E.; Sasidharan, R.; Yang, H.; Paccanaro, A.; Gillis, J.; Sedeño Cortés, A.E.; Pavlidis, P.; Feng, S.; Cejuela, J.M.; Goldberg, T.; Hamp, T.; Richter, L.; Salamov, A.; Gabaldon, T.; Marcet Houben, M.; Supek, F.; Gong, Q.; Ning, W.; Zhou, Y.; Tian, W.; Falda, M.; Fontana, P.; Lavezzo, E.; Toppo, S.; Ferrari, C.; Giollo, M.; Piovesan, D.; Tosatto, S.C.E.; Del Pozo, A.; Fernández, J.M.; Maietta, P.; Valencia, A.; Tress, M.L.; Benso, A.; Di Carlo, S.; Politano, G.; Savino, A.; Rehman, H.U.; Re, M.; Mesiti, M.; Valentini, G.; Bargsten, J.W.; van Dijk, A.D.J.; Gemovic, B.; Glisic, S.; Perovic, V.; Veljkovic, V.; Veljkovic, N.; Almeida E. Silva, D.C.; Vencio, R.Z.N.; Sharan, M.; Vogel, J.; Kansakar, L.; Zhang, S.; Vucetic, S.; Wang, Z.; Sternberg, M.J.E.; Wass, M.N.; Huntley, R.P.; Martin, M.J.; O'Donovan, C.; Robinson, P.N.; Moreau, Y.; Tramontano, A.; Babbitt, P.C.; Brenner, S.E.; Linial, M.; Orengo, C.A.; Rost, B.; Greene, C.S.; Mooney, S.D.; Friedberg, I.; Radivojac, P.
Pathway Inspector: a pathway based web application for RNAseq analysis of model and non-model organisms
2017-01-01 Bianco, L.; Riccadonna, S.; Lavezzo, E.; Falda, M.; Formentin, E.; Cavalieri, D.; Toppo, S.; Fontana, P.
Transcriptome and cell physiological analyses in different rice cultivars provide novel insights into adaptive and salinity stress responses
2018-01-01 Formentin, E.; Sudiro, C.; Perin, G.; Riccadonna, S.; Barizza, E.; Baldoni, E.; Lavezzo, E.; Stevanato, P.; Sacchi, G.A.; Fontana, P.; Toppo, S.; Morosinotto, T.; Zottini, M.; Lo Schiavo, F.
Comparative genome analysis of Lactococcus lactis isolated from Trentino cheese and environment adaptation
2019-01-01 Franciosi, E.; Sonego, P.; Fontana, P.; Cestaro, A.; Donati, C.; Tuohy, K.
Data di pubblicazione | Titolo | Autore(i) | Tipo | File |
---|---|---|---|---|
1-gen-2012 | Deconstruction of the (paleo)polyploid grapevine genome based on the analysis of transposition events involving NBS resistance genes | Malacarne, G.; Perazzolli, M.; Cestaro, A.; Sterck, L.; Fontana, P.; Van de Peer, Y.; Viola, R.; Velasco, R.; Salamini, F. | Articolo in rivista | |
1-gen-2012 | Downy mildew resistance induced by Trichoderma harzianum T39 in susceptible grapevines partially mimics transcriptional changes of resistant genotypes | Perazzolli, M.; Moretto, M.; Fontana, P.; Ferrarini, A.; Velasco, R.; Moser, C.; Delledonne, M.; Pertot, I. | Articolo in rivista | |
1-gen-2012 | Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data | Finotello, F.; Lavezzo, E.; Fontana, P.; Peruzzo, D.; Albiero, A.; Barzon, L.; Falda, M.; Di Camillo, B.; Toppo, S. | Articolo in rivista | |
1-gen-2012 | Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms | Falda, M.; Toppo, S.; Pescarolo, A.; Lavezzo, E.; Di Camillo, B.; Facchinetti, A.; Cilia, E.; Velasco, R.; Fontana, P. | Articolo in rivista | |
1-gen-2013 | Identification of specific grapevine biomarkers to select efficient resistance inducers | Lenzi, L.; Palmieri, M.C.; Moretto, M.; Fontana, P.; Matafora, V.; Bachi, A.; Pertot, I.; Perazzolli, M. | Abstract in Atti di convegno | |
1-gen-2013 | Pathway-based analysis of microarray and RNAseq data using pathway processor 2.0 | Beltrame, L.; Bianco, L.; Fontana, P.; Cavalieri, D. | Contributo in volume (Capitolo o Saggio) | |
1-gen-2013 | Linking genomics and ecology to investigate the complex evolution of an invasive Drosophila pest | Ometto, L.; Cestaro, A.; Ramasamy, S.; Grassi, A.; Revadi, S.; Siozios, S.; Moretto, M.; Fontana, P.; Varotto, C.; Pisani, D.; Dekker, T.; Wrobel, N.; Viola, R.; Pertot, I.; Cavalieri, D.; Blaxter, M.; Anfora, G.; Rota Stabelli, O. | Articolo in rivista | |
1-gen-2013 | Pathway Processor 2.0: a web resource for pathway-based analysis of high-throughput data | Beltrame, L.; Bianco, L.; Fontana, P.; Cavalieri, D. | Articolo in rivista | |
1-gen-2013 | Identification of Pyrus single nucleotide polymorphisms (SNPs) and evaluation for genetic mapping in European pear and interspecific Pyrus hybrids | Montanari, S.; Saeed, M.; Knaebel, M.; Kim, Y.K.; Troggio, M.; Malnoy, M.A.; Velasco, R.; Fontana, P.; Won, K.H.; Durel, C.E.; Perchepied, L.; Schaffer, R.; Wiedow, C.; Bus, V.; Brewer, L.; Gardiner, S.E.; Crowhurst, R.N.; Chagné, D. | Articolo in rivista | |
1-gen-2013 | A large-scale evaluation of computational protein function prediction | Radivojac, P.; Clark, W.T.; Oron, T.R.; Schnoes, A.M.; Wittkop, T.; Sokolov, A.; Graim, K.; Funk, C.; Verspoor, K.; Ben Hur, A.; Pandey, G.; Yunes, J.M.; Talwalkar, A.S.; Repo, S.; Souza, M.L.; Piovesan, D.; Casadio, R.; Wang, Z.; Cheng, J.L.; Fang, H.; Goughl, J.; Koskinen, P.; Toronen, P.; Nokso Koivisto, J.; Holm, L.; Cozzetto, D.; Buchan, D.W.A.; Bryson, K.; Jones, D.T.; Limaye, B.; Inamdar, H.; Datta, A.; Manjari, S.K.; Joshi, R.; Chitale, M.; Kihara, D.; Lisewski, A.M.; Erdin, S.; Venner, E.; Lichtarge, O.; Rentzsch, R.; Yang, H.X.; Romero, A.E.; Bhat, P.; Paccanaro, A.; Hamp, T.; Kassner, R.; Seemayer, S.; Vicedo, E.; Schaefer, C.; Achten, D.; Auer, F.; Boehm, A.; Braun, T.; Hecht, M.; Heron, M.; Honigschmid, P.; Hopf, T.A.; Kaufmann, S.; Kiening, M.; Krompass, D.; Landerer, C.; Mahlich, Y.; Roos, M.; Bjorne, J.; Salakoski, T.; Wong, A.; Shatkay, H.; Gatzmann, F.; Sommer, I.; Wass, M.N.; Sternberg, M.J.E.; Skunca, N.; Supek, F.; Bosnjak, M.; Panov, P.; Dzeroski, S.; Smuc, T.; Kourmpetis, Y.A.I.; van Dijk, A.D.J.; ter Braak, C.J.F.; Zhou, Y.P.; Gong, Q.T.; Dong, X.R.; Tian, W.D.; Falda, M.; Fontana, P.; Lavezzo, E.; Di Camillo, B.; Toppo, S.; Lan, L.; Djuric, N.; Guo, Y.H.; Vucetic, S.; Bairoch, A.; Linial, M.; Babbitt, P.C.; Brenner, S.E.; Orengo, C.; Rost, B.; Mooney, S.D.; Friedberg, I. | Articolo in rivista | |
1-gen-2014 | Characterization of Resistance Gene Analogues (RGAs) in apple (Malus x domestica Borkh.) and their evolutionary history of the Rosaceae family | Perazzolli, M.; Malacarne, G.; Baldo, A.; Righetti, L.; Bailey, A.G.; Fontana, P.; Velasco, R.; Malnoy, M.A. | Articolo in rivista | |
1-gen-2014 | keeSeek: searching distant non-existing words in genomes for PCR-based applications | Falda, M.; Fontana, P.; Barzon, L.; Toppo, S.; Lavezzo, E. | Articolo in rivista | |
1-gen-2014 | The draft genome sequence of European pear (Pyrus communis L. ‘Bartlett’) | Chagné, D.; Crowhurs, R.N.; Pindo, M.; Thrimawithana, A.; Deng, C.; Ireland, H.; Fiers, M.; Dzierzon, H.; Cestaro, A.; Fontana, P.; Bianco, L.; Lu, A.; Storey, R.; Knäbel, M.; Saeed, M.; Montanari, S.; Kyeong Kim, Y.; Nicolini, D.; Larger, S.; Stefani, E.; Allan, A.C.; Bowen, J.; Harvey, I.; Johnston, J.; Malnoy, M.A.; Troggio, M.; Perchepied, L.; Sawyer, G.; Wiedow, C.; Won, K.; Viola, R.; Hellens, R.P.; Brewer, L.; Bus, V.G.M.; Schaffer, R.J.; Gardiner, S.E.; Velasco, R. | Articolo in rivista | |
1-gen-2015 | MICCA: a complete and accurate software for taxonomic profiling of metagenomic data | Albanese, D.; Fontana, P.; De Filippo, C.; Cavalieri, D.; Donati, C. | Articolo in rivista | |
1-gen-2015 | Identification of low temperature stress regulated transcript sequences and gene families in Italian cypress | La Porta, N.; Sablok, G.; Emiliani, G.; Hietala, A.M.; Giovannelli, A.; Fontana, P.; Potenza, E.; Baldi, P. | Articolo in rivista | |
1-gen-2016 | Enhancing protein function prediction with taxonomic constraints: the Argot2.5 web server | Lavezzo, E.; Falda, M.; Fontana, P.; Bianco, L.; Toppo, S. | Articolo in rivista | |
1-gen-2016 | An expanded evaluation of protein function prediction methods shows an improvement in accuracy | Jiang, Y.; Oron, T.R.; Clark, W.T.; Bankapur, A.R.; D'Andrea, D.; Lepore, R.; Funk, C.S.; Kahanda, I.; Verspoor, K.M.; Ben Hur, A.; Koo, D.C.E.; Penfold Brown, D.; Shasha, D.; Youngs, N.; Bonneau, R.; Lin, A.; Sahraeian, S.M.E.; Martelli, P.L.; Profiti, G.; Casadio, R.; Cao, R.; Zhong, Z.; Cheng, J.; Altenhoff, A.; Skunca, N.; Dessimoz, C.; Dogan, T.; Hakala, K.; Kaewphan, S.; Mehryary, F.; Salakoski, T.; Ginter, F.; Fang, H.; Smithers, B.; Oates, M.; Gough, J.; Törönen, P.; Koskinen, P.; Holm, L.; Chen, C.; Hsu, W.; Bryson, K.; Cozzetto, D.; Minneci, F.; Jones, D.T.; Chapman, S.; Bkc, D.; Khan, I.K.; Kihara, D.; Ofer, D.; Rappoport, N.; Stern, A.; Cibrian Uhalte, E.; Denny, P.; Foulger, R.E.; Hieta, R.; Legge, D.; Lovering, R.C.; Magrane, M.; Melidoni, A.N.; Mutowo Meullenet, P.; Pichler, K.; Shypitsyna, A.; Li, B.; Zakeri, P.; Elshal, S.; Tranchevent, L.; Das, S.; Dawson, N.L.; Lee, D.; Lees, J.G.; Sillitoe, I.; Bhat, P.; Nepusz, T.; Romero, A.E.; Sasidharan, R.; Yang, H.; Paccanaro, A.; Gillis, J.; Sedeño Cortés, A.E.; Pavlidis, P.; Feng, S.; Cejuela, J.M.; Goldberg, T.; Hamp, T.; Richter, L.; Salamov, A.; Gabaldon, T.; Marcet Houben, M.; Supek, F.; Gong, Q.; Ning, W.; Zhou, Y.; Tian, W.; Falda, M.; Fontana, P.; Lavezzo, E.; Toppo, S.; Ferrari, C.; Giollo, M.; Piovesan, D.; Tosatto, S.C.E.; Del Pozo, A.; Fernández, J.M.; Maietta, P.; Valencia, A.; Tress, M.L.; Benso, A.; Di Carlo, S.; Politano, G.; Savino, A.; Rehman, H.U.; Re, M.; Mesiti, M.; Valentini, G.; Bargsten, J.W.; van Dijk, A.D.J.; Gemovic, B.; Glisic, S.; Perovic, V.; Veljkovic, V.; Veljkovic, N.; Almeida E. Silva, D.C.; Vencio, R.Z.N.; Sharan, M.; Vogel, J.; Kansakar, L.; Zhang, S.; Vucetic, S.; Wang, Z.; Sternberg, M.J.E.; Wass, M.N.; Huntley, R.P.; Martin, M.J.; O'Donovan, C.; Robinson, P.N.; Moreau, Y.; Tramontano, A.; Babbitt, P.C.; Brenner, S.E.; Linial, M.; Orengo, C.A.; Rost, B.; Greene, C.S.; Mooney, S.D.; Friedberg, I.; Radivojac, P. | Articolo in rivista | |
1-gen-2017 | Pathway Inspector: a pathway based web application for RNAseq analysis of model and non-model organisms | Bianco, L.; Riccadonna, S.; Lavezzo, E.; Falda, M.; Formentin, E.; Cavalieri, D.; Toppo, S.; Fontana, P. | Articolo in rivista | |
1-gen-2018 | Transcriptome and cell physiological analyses in different rice cultivars provide novel insights into adaptive and salinity stress responses | Formentin, E.; Sudiro, C.; Perin, G.; Riccadonna, S.; Barizza, E.; Baldoni, E.; Lavezzo, E.; Stevanato, P.; Sacchi, G.A.; Fontana, P.; Toppo, S.; Morosinotto, T.; Zottini, M.; Lo Schiavo, F. | Articolo in rivista | |
1-gen-2019 | Comparative genome analysis of Lactococcus lactis isolated from Trentino cheese and environment adaptation | Franciosi, E.; Sonego, P.; Fontana, P.; Cestaro, A.; Donati, C.; Tuohy, K. | Abstract in Atti di convegno |
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