To facilitate the exploration of publicly available Zea mays expression data, we constructed a maize expression compendium, making use of an integration methodology and a consistent probe to gene mapping based on the 5b.60 sequence release of Z. mays. The compendium is made available through a web portal MAGIC that hosts a variety of analysis tools to easily browse and analyze the data. Our compendium is different from previous initiatives in combining expression values across different experiments by providing a consistent gene annotation across different platforms
Fu, Q.; Fierro, A.C.; Meysman, P.; Sanchez Rodriguez, A.; Vandepoele, K.; Marchal, K.; Engelen, K.A. (2014). MAGIC: access portal to a cross-platform gene expression compendium for maize. BIOINFORMATICS, 30 (9): 1316-1318. doi: 10.1093/bioinformatics/btt739 handle: http://hdl.handle.net/10449/24011
MAGIC: access portal to a cross-platform gene expression compendium for maize
Engelen, Kristof Arthur
2014-01-01
Abstract
To facilitate the exploration of publicly available Zea mays expression data, we constructed a maize expression compendium, making use of an integration methodology and a consistent probe to gene mapping based on the 5b.60 sequence release of Z. mays. The compendium is made available through a web portal MAGIC that hosts a variety of analysis tools to easily browse and analyze the data. Our compendium is different from previous initiatives in combining expression values across different experiments by providing a consistent gene annotation across different platforms
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